Difference between revisions of "MPI"

Revision as of 22:30, 16 July 2012

Documentation

• http://www.mpi-forum.org/docs/docs.html

Implementations

• LAM
• MPICH
• OpenMPI
• MPICH2

Manual installation

Install in separate subfolder $HOME/SUBDIR, because you may need some MPI implementations (see Libraries)

Tips & Tricks

• For safe consecutive communications create new context, for example:

int communication_operation(MPI_Comm comm) {
MPI_Comm newcomm;
MPI_Comm_dup(comm, &newcomm);
... // work with newcomm
MPI_Comm_free(&newcomm);
}

Mind the overhead of MPI_Comm_dup and MPI_Comm_free.

• If you are having trouble with the multi-homed nature of the HCL Cluster, check here

Debugging

• Add the following code:

int rank;
MPI_Comm_rank(MPI_COMM_WORLD, &rank);
if (!rank)
  getc(stdin);
MPI_Barrier(MPI_COMM_WORLD);

• Compile your code with -g option
• Run parallel application
• Attach to process(es) from GDB
  • MPICH-1 runs a background process for each application process: 0, 0b, 1, 1b, ..., therefore, attach to the first ones.

Profiling

Paraver by Barcelona Supercomputing Center is a "a flexible performance visualization and analysis tool"